Pre-Prints 2025 6S RNA facilitates bacterial virulence and adaptation at the epithelial barrier bioRxiv Sarigoz, Oytun; Valeriano, Valerie D.; Avican, Ummehan; Wang, Helen; Nilsson, Kristina; Hasanzade, Narmin; Mahmood, Firoj; Fahlgren, Anna; Bauer, Sebastian; Griffié, Juliette; Fällman, Maria; Avican, Kemal DOI | Download full text (pdf) Bacterial protein function prediction via multimodal deep learning bioRxiv Giulia, Muzio; Adamer, Michael; Fernandez, Leyden; Borgwardt, Karsten; Avican, Kemal DOI | Download full text (pdf) Publications 2025 RfaH is essential for virulence and adaptive responses in Yersinia pseudotuberculosis infection mBio Waititu, Joram K.; Nilsson, Kristina; Larrouy-Maumus, Gerald; Costa, Tiago R. D.; Avican, Kemal DOI | Download full text (pdf) 2023 Co-PATHOgenex Web Application for Assessing Complex Stress Responses in Bacteria Microbiology Spectrum Fernández, Leyden; Rosvall, Martin; Normark, Johan; Fällman, Maria; Avican, Kemal DOI | Download full text (pdf) | GitHub | Web Application 2021 RNA Atlas of Human Bacterial Pathogens Uncovers Stress Dynamics Linked to Infection Nature Communications, Springer Nature 2021, Vol. 12, (1) Avican, Kemal; Aldahdooh, Jehad; Togninalli, Matteo; Mahmud, A. K. M. Firoj; Tang, Jing; Borgwardt, Karsten M.; Rhen, Mikael; Fällman, Maria DOI | Download full text (pdf) Spatiotemporal Variations in Growth Rate and Virulence Plasmid Copy Number During Yersinia pseudotuberculosis Infections Infection and Immunity, American Society for Microbiology 2021, Vol. 89, (4) Schneiders, Stephan; Hechard, Tifaine; Edgren, Tomas; Avican, Kemal; Fällman, Maria; Fahlgren, Anna; Wang, Helen DOI | Download full text (pdf) 2020 Genome-Scale Mapping Reveals Complex Regulatory Activities of RpoN in Yersinia pseudotuberculosis mSystem, Vol. 5, (6) Mahmud, A. K. M. Firoj; Nilsson, Kristina; Fahlgren, Anna; Navais, Roberto; Choudhury, Rajdeep; Avican, Kemal; Fällman, Maria DOI | Download full text (pdf) 2016 Increased Plasmid Copy Number Is Essential for Yersinia T3SS Function and Virulence Science, Vol. 353, (6298) : 492-495 Wang, He; Avican, Kemal; Fahlgren, Anna; Erttman, Saskia F.; Nuss, Aaron M.; Dersch, Petra; Fällman, Maria; Edgren, Tomas; Wolf-Watz, Hans DOI | Download full text (pdf) 2015 Reprogramming of Yersinia from Virulent to Persistent Mode Revealed by Complex In Vivo RNA-seq Analysis PloS Pathogens, Vol. 11, (1) Avican, Kemal; Fahlgren, Anna; Huss, Mikael; et al. DOI | Download full text (pdf) 2014 Colonization of Cecum Is Important for Development of Persistent Infection by Yersinia pseudotuberculosis Infection and Immunity, American Society for Microbiology 2014, Vol. 82, (8) : 3471-3482 Fahlgren, Anna; Avican, Kemal; Westermark, Linda; et al. DOI | Download full text (pdf)
